PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA6119
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 273aa    MW: 30456.6 Da    PI: 5.769
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA6119genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.3e-183887255
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              ++ GVr+++ +grWvAeI+d +   ++ r +lg+f taeeAa+a+++a+  l+g
  Tp57577_TGAC_v2_mRNA6119 38 KFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 87
                              799******.7*********32...35**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.6E-3538101IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-193895IPR016177DNA-binding domain
PfamPF008475.3E-133887IPR001471AP2/ERF domain
PROSITE profilePS5103219.5853895IPR001471AP2/ERF domain
CDDcd000183.14E-323894No hitNo description
Gene3DG3DSA:3.30.730.106.7E-283895IPR001471AP2/ERF domain
PRINTSPR003679.2E-83950IPR001471AP2/ERF domain
PRINTSPR003679.2E-86177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MEIQFQQPNM QNQKAGISVT NKGGKFKGRN RNSNNTNKFV GVRQRPSGRW VAEIKDTTQK  60
IRMWLGTFET AEEAARAYDE AACLLRGSNT RTNFITHVSL DSPLASRIRN LLNNRKGDKK  120
QENDVASSAS NSNNTSNAST VSNTNTITSN DDNKESAVSS EATQKTELFE DVYKPDLSNF  180
KEDFESGSKS NISWGFGPVF DHFPFAQLLD ISKTNGMNDA SNLELSEFER MKVERQISAS  240
LYAINGVHEY METVHESNEA LWDLPPLCSL FC*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1705800.0AC170580.3 Medicago truncatula chromosome 7 clone mte1-32m6, complete sequence.
GenBankDQ9849420.0DQ984942.1 Medicago truncatula Ser/Thr protein kinase (PRK), exostosin-like protein (EXO), putative RNA binding protein (RAN BP), transcription factor ERF (ERN), and alpha-tubulin (aTUB) genes, complete cds; and unknown gene.
GenBankEF3963300.0EF396330.1 Medicago truncatula ERF transcription factor (ERN) gene, complete cds.
GenBankEU0388020.0EU038802.2 Medicago truncatula ERN1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003624634.21e-156AP2 domain class transcription factor
TrEMBLA2Q5W11e-164A2Q5W1_MEDTR; ERF transcription factor
STRINGGLYMA19G29000.11e-137(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33413069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-41related to AP2 11